Publications
Publications
Denker M, Grün S, Wachtler T, Scherberger H (2021) Reproducibility and efficiency in handling complex neurophysiological data. Neuroforum 27(1):27-34. doi:10.1515/nf-2020-0041
Sprenger J, Zehl L, Pick J, Sonntag M, Grewe J, Wachtler T, Grün S and Denker M (2019) odMLtables: A user-friendly approach for managing metadata of neurophysiological experiments. Front. Neuroinform. 13:62. doi:10.3389/fninf.2019.00062
Zehl L, Jaillet F, Stoewer A, Grewe J, Sobolev A, Wachtler T, Brochier G, Riehle A, Denker M, Grün S (2016) Handling Metadata in a Neurophysiology Laboratory. Front. Neuroinform. 10:26.
Eglen S, Marwick B, Halchenko Y, Hanke M, Sufi S, Gleeson P, Silver RA, Davison A, Lanyon L, Abrams M, Wachtler T, Willshaw DJ, Pouzat C, Poline JB (2016) Towards standard practices for sharing computer code and programs in neuroscience. Nat Neurosci 20:770-773. doi: 10.1038/nn.4550
Teeters JL, Benda J, Davison AP, Eglen S, Gerhard S, Gerkin RC, Grethe J, Grewe J, Harris K, Kellner C, Le Franc Y, Moucek R, Prodanov D, Pröpper R, Sessions HL, Smith LS, Sobolev A, Sommer FT, Stoewer A, Wachtler T, Wark B (2016). Requirements for storing electrophysiology data. Preprint, http://arxiv.org/abs/1605.07673v2
Ježek P., Moucek R., Krauz J., Hošek J., Le Franc Y., Wachtler T. and Grewe J. (2015). Framework for collection of electrophysiology data. In: Proceedings of the International Conference on Health Informatics (BIOSTEC 2015) ISBN 978-989-758-068-0, pages 558-565. doi: 10.5220/0005275605580565
Sobolev A, Stoewer A, Leonhardt AP, Rautenberg PL, Kellner CJ, Garbers C, Wachtler T (2014) Integrated platform and API for electrophysiological data. Front. Neuroinform. 8:32.
Sobolev A, Stoewer A, Pereira M, Kellner CJ, Garbers C, Rautenberg PL and Wachtler T (2014). Data management routines for reproducible research using the G-Node Python Client library. Front. Neuroinform. 8:15.
Garcia S, Guarino D, Jaillet F, Jennings TR, Pröpper R, Rautenberg PL, Rodgers C, Sobolev A, Wachtler T, Yger P and Davison AP (2014). Neo: an object model for handling electrophysiology data in multiple formats. Front. Neuroinform. 8:10.
Jezek P, Moucek R, Le Franc Y, Wachtler T, Grewe J (2013) Framework for automatic generation of graphical layout compatible with multiple platforms. In: Visual Languages and Human-Centric Computing (VL/HCC), 2013 IEEE Symposium on, pp. 193-194.
Bakker R, Wachtler T and Diesmann M (2012) CoCoMac 2.0 and the future of tract-tracing databases. Front. Neuroinform. 6:30.
Grewe J, Wachtler T and Benda J (2011) A bottom-up approach to data annotation in neurophysiology. Front. Neuroinform. 5:16.
Rautenberg PL, Wachtler T (2011) Flexible specification of data models for neuroscience databases. Database and Expert Systems Applications 2011, pp. 75-78. doi: 10.1109/DEXA.2011.35
Rautenberg PL, Sobolev A, Herz AV, Wachtler T (2011): A database system for electrophysiological data. In: A. Hameurlain et al. (Eds.): TLDKS IV, Lecture Notes in Computer Science 6990, p. 1-14.
Herz AVM, Meier R, Nawrot MP, Schiegel W, Zito T (2008) G-Node: An integrated tool-sharing platform to support cellular and systems neurophysiology in the age of global neuroinformatics. Neural Networks 21:1070-1075 [download pdf]
Abstracts
Sonntag M, Koutsou A, Wachtler T (2022) Off- and on-site collaboration and publication: The G-Node Infrastructure Services for research data management. Bernstein Conference 2022. doi: 10.12751/nncn.bc2022.128
Koutsou A, Sonntag M, Vanek J, Wachtler T (2021) GIN: Open platform and services for efficient research data management, collaboration and data publication. INCF Neuroinformatics Assembly, April 19 - 29, 2021. https://neuroinformatics.incf.org/node/216
Koutsou A, Sonntag M, Grewe J, Wachtler T (2020) Open tools and services for efficient data management, collaboration and data publication. Bernstein Conference 2020. doi: 10.12751/nncn.bc2020.0096
Sonntag M, Koutsou A, Garbers C, Vanek J, Wachtler T (2019) Microservice infrastructure for continuous validation, processing and indexing of research data on an open platform. Neuroinformatics 2019. doi: 10.12751/incf.ni2019.0067
Sonntag M, Koutsou A, Vanek J, Kellner C, Garbers C, Grewe J, Wachtler T (2019) Lightweight tools for safe and efficient management, processing and validation of research data. Bernstein Conference 2019. doi: 10.12751/nncn.bc2019.0075
Garbers C, Koutsou A, Sonntag M, Wachtler T (2018) The G-Node Infrastructure Services: Safe, efficient and seamless data management for neuroscience. Neuroinformatics 2018. https://doi.org/10.12751/incf.ni2018.0074
Garbers C, Sonntag M, Koutsou A, Kellner CJ, Grewe J, Wachtler T (2018) Achieving reproducible data workflows: Lightweight tools for safe and efficient data management. Bernstein Conference 2018, September 26-28, Berlin, Germany. https://doi.org/10.12751/nncn.bc2018.0079
Sonntag M, Koutsou A, Garbers C, Kellner CJ, Grewe J, Wachtler T (2017) Tools, Formats and services for efficient data management, collaboration and reproducibility in neuroscience. Bernstein Conference 2017. doi: 10.12751/nncn.bc2017.0137
Kellner CJ, Stoewer A, Sonntag M, Koutsou A, Sobolev A, Benda J, Wachtler T, Grewe J (2016) Keeping track of your data with NIX: tools for comprehensive data organization. Bernstein Conference 2016. doi: 10.12751/nncn.bc2016.0121
Kellner CJ, Stoewer A, Sonntag M, Koutsou A, Sobolev A, Benda J, Wachtler T and Grewe J (2016). Versatile format and tools for comprehensive data organization in neuroscience. Front. Neuroinform. Conference Abstract: Neuroinformatics 2016. doi: 10.3389/conf.fninf.2016.20.00055
Stoewer A, Kellner CJ, Sobolev A, Sonntag M, Benda J, Wachtler T, Grewe J (2015) Consistent data organization made easy: Versatile format for data and metadata. Society for Neuroscience Annual Meeting 2015, Oct 17-21, Chicago, USA
Stoewer A, Kellner CJ, Sobolev A, Sonntag M, Benda J, Wachtler T, Grewe J (2015) Consistent data organization made easy: Versatile file format for neuroscience. Bernstein Conference 2015. doi: 10.12751/nncn.bc2015.0128
Stoewer A, Benda J, Garbers C, Kellner CJ, Sobolev A, Wachtler T and Grewe J (2013). Single-file solution for storing neuroscience data and metadata.. Front. Neuroinform. Conference Abstract: Neuroinformatics 2013. doi: 10.3389/conf.fninf.2013.09.00077
Bakker R, Tiesinga P, Diesmann M and Wachtler T (2013). Setting up a web-based neuroscience database has never been easier: The CoCoMac engine goes open source. Front. Neuroinform. Conference Abstract: Neuroinformatics 2013. doi: 10.3389/conf.fninf.2013.09.00099
Sobolev A, Stoewer A, Leonhardt A, Rautenberg P, Kellner C, Garbers C, Herz A, Wachtler T (2013) Web Data Storage for Management and Sharing of Neuroscience Data. Bernstein Conference 2013. doi: 10.12751/nncn.bc2013.0231
Sobolev A, Leonhardt AP, Kellner C, Rautenberg P, Herz AV and Wachtler T (2012). Cloud Services and a Data API for Electrophysiology. Front. Comput. Neurosci. Conference Abstract: Bernstein Conference 2012.
Garbers C, Kellner C, Mokrzycki L and Wachtler T (2012). Neuronal data storage using document oriented databases. Front. Comput. Neurosci. Conference Abstract: Bernstein Conference 2012.
Leonhardt AP, Sobolev A, Rautenberg PL, Garbers C, Kellner C, Herz AV and Wachtler T (2011). Novel tools and techniques for interacting with neurophysiological data. Front. Comput. Neurosci. Conference Abstract: BC11 : Computational Neuroscience & Neurotechnology Bernstein Conference & Neurex Annual Meeting 2011.
Sobolev A, Rautenberg P, Leonhardt A, Kellner C, Garbers C, Grewe J, Benda J, Herz A and Wachtler T (2011). Methods and Data Models for Neurophysiological Data Management. Front. Comput. Neurosci. Conference Abstract: BC11 : Computational Neuroscience & Neurotechnology Bernstein Conference & Neurex Annual Meeting 2011.
Sobolev A, Rautenberg P, Benda J, Grewe J, Herz A and Wachtler T (2011). Data management for Neurophysiology at the German INCF Node. Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics.
Grewe J, Sobolev A, Wachtler T and Benda J (2011). From recording to sharing of data - embedding metadata handling into the laboratory workflow using odML. Front. Neuroinform. Conference Abstract: 4th INCF Congress of Neuroinformatics.
Sobolev A, Rautenberg P, Kellner C, Benda J, Grewe J, Nawrot MP, Schiegel W, Zito T, Herz AV and Wachtler T (2011). Neurophysiology data management for efficient analysis and collaborative work Göttingen Meeting of the German Neuroscience Society 2011.
Grewe J, Wachtler T and Benda J (2010). odML Format and Terminologies for Automated Handling of (Meta)data. Front. Neurosci. Conference Abstract: Neuroinformatics 2010.
Sobolev A, Rautenberg P, Benda J, Grewe J, Nawrot M, Schiegel W, Zito T, Herz A and Wachtler T (2010). Tools for Neurophysiology Data Management and Analysis at the German Neuroinformatics Node. Front. Neurosci. Conference Abstract: Neuroinformatics 2010.
Wachtler T, Nawrot MP, Benda J, Grewe J, Zito T, Schiegel W, Herz AVM (2009) Development of tools for data analysis and data sharing at the German Neuroinformatics node. 2nd INCF Congress of Neuroinformatics Pilsen, Czech Republic, September 6-8.
